Daniel "Dan" Jones is the nephew of Stacy Jones and the younger cousin of Matt. He was played by the late Ari Magder.
Dan became a regular at Shining Time Station since his cousin Matt moved away after Season 1 ended. Soft-spoken and kind, Dan likes to play the harmonica, has an Indian Valley Railroad ticket collection, and has an interest in dancing. His best friends at Shining Time Station are Kara Cupper and Becky.
Dan is a soft-spoken, handsome and kind little boy. He is often afraid to do some things, but with the help of Mr. Conductor and his friends, he overcomes his fears.
- Season 2 - Scare Dares, Oh, What A Tangled Web, The Magic is Believing, Win, Lose or Draw, Sweet and Sour, Achoo, A Dog's Life, Field Day, Wrong Track, Washout, Crackpot, Yabba, Yabba, Yabba, Nickel in a Pickle, Stop the Press, He Loves Me, He Loves Me Not, Double Trouble, Is Anybody There?, Do I Hear, Jingle, Jingle, Jingle and All's Fair
- Season 3 - Schemer's Alone, Bully for Mr. Conductor, Stacy Cleans Up, Billy Saves the Day, Billy's Party, Fortune Teller Schemer, Billy's Runaway Train, Schemer Goes Camping, Mr. Conductor's Evil Twin (stock footage), Bad Luck Day at Shining Time Station, Mr. Conductor's Fourth of July, Stacy Forgets Her Name, Schemer's Special Club, Mr. Conductor's Movie, The Joke's on Schemer, Dance Crazy, Mysterious Stranger, Dan's Big Race, Mr. Conductor Gets Left Out, Mr. Conductor's Big Sleepwalk and Stacy Says No